Deatailed information for gene ENSG00000228107

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  • Basic information
  • CohesinDB ID: CDBG00027825
  • Gene Symbol: AP000692.1
  • Ensembl ID: ENSG00000228107
  • Gene locus: chr21:36360629-36362040 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3562 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.399
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,IMR-90,K-562,H1-hESC,HFF-hTERT,NaiveB,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal
  • Related loop: chr21:33550000-33575000~~chr21:36350000-36375000, chr21:36125000-36150000~~chr21:36350000-36375000, chr21:36175000-36200000~~chr21:36350000-36375000, chr21:36200000-36225000~~chr21:36350000-36375000, chr21:36250000-36275000~~chr21:36350000-36375000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, GSE52457, 4DNFIPAF4PYT, 4DNFIQVMVRP6, GSE43070, 4DNFIM2BMJ33, Direct, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIE8E4ANZ, GSE105028, GSE108787, GSE84022, 4DNFIW8TIFI5, 4DNFII84FBKM, 4DNFI7H4II2V
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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