Deatailed information for gene ENSG00000228149

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  • Basic information
  • CohesinDB ID: CDBG00027856
  • Gene Symbol: RPL3P1
  • Ensembl ID: ENSG00000228149
  • Gene locus: chr21:36168969-36170180 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2103 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.369
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,HCT-116,Hep-G2,K-562,MCF-10A,MB157,Olfactory,H1-hESC,A-549,Motor-Neuron,HAP1,MCF7-FASR,NaiveB,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,HUES64
  • Related loop: chr21:36075000-36100000~~chr21:36175000-36200000, chr21:36150000-36175000~~chr21:36300000-36325000, chr21:36150000-36175000~~chr21:36325000-36350000, chr21:36150000-36175000~~chr21:36375000-36400000, chr21:36150000-36175000~~chr21:39175000-39200000, chr21:36150000-36175000~~chr21:46175000-46200000, chr21:36175000-36200000~~chr21:36350000-36375000, chr21:36175000-36200000~~chr21:36575000-36600000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFIQWD8ZYD, ENCSR662QKG, GSE95015, ENCSR194SRI, 4DNFIBRSIPE4, GSE118716, GSE84022, 4DNFIOX3BGNE, ENCSR410MDC, ENCSR866FWQ, 4DNFIREVU1Z5, 4DNFIFHU75I5, 4DNFIRKGMZRQ, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE97394, 4DNFIOUSETUP, 4DNFIIMZB6Y9, GSE80820, 4DNFIE8T8JZ8, 4DNFISTWNV9C, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFI1UEG1HD, GSE101921, 4DNFIK61ILGM, ENCSR244BBG, ENCSR393LOP, 4DNFIQVMVRP6, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIZGCA8AH, GSE116869
  • Cohesin-loop subunit: Rad21,Other,SMC1
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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