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Basic information

CohesinDB ID: CDBG00027920

Gene Symbol: AP001476.3

Ensembl ID: ENSG00000228235

Gene locus: chr21:46052595-46053105 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1436 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.963
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,Liver,K-562,H1-hESC,HFF-hTERT,HFFc6,MCF7-FASR,HeLa-S3,H9-hESC,H1-Mesendoderm

Cohesin-loop type: HiC,Direct

Cohesin-loop study: GSE44267, GSE52457, 4DNFIPAF4PYT, 4DNFIWZEN3FF, 4DNFIM2BMJ33, Direct, 4DNFIFI6NIKJ, GSE118716, GSE105028, 4DNFIDBIEXI7, 4DNFI5SUHCGZ, GSE58752, 4DNFII84FBKM, 4DNFIW8TIFI5

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000228235