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Basic information

CohesinDB ID: CDBG00027972

Gene Symbol: AP001610.2

Ensembl ID: ENSG00000228318

Gene locus: chr21:41441055-41445708 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0817 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.627
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,Pancreas,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,Germinal-Center-B,Hep-G2,H1-hESC,HCC1599,NaiveB,HUVEC,RT-112,Left-Ventricle,CC-2551,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, GSE87112, 4DNFI3CFMRID, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, GSE43070, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE108787, GSE84022, GSE120294, 4DNFIDSWKFF5, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIMEG1QIC, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIF2D3TL9, 4DNFIREVU1Z5, 4DNFIRKGMZRQ, GSE99541, 4DNFIHN2QSMX, GSE155380, 4DNFICSTCJQZ, 4DNFIV239W4L, 4DNFIOUSETUP, GSE80820, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, GSE52457, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIX7H3CE2, GSE101921, 4DNFIYIAUEPW, ENCSR244BBG, GSE116872, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIS5F6EBL, GSE58752, 4DNFIBKZK63V, GSE116869, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000228318