Browse_each

Basic information

CohesinDB ID: CDBG00028159

Gene Symbol: POLR2CP1

Ensembl ID: ENSG00000228600

Gene locus: chr21:14757587-14758352 Strand: +

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1896 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.838
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HEK293T,iPSC,GM12878,K-562,H1-hESC,NaiveB,HeLa-S3,H9-hESC,H1-Mesendoderm,Olfactory,HUVEC

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIH2A7IKF, 4DNFIQYQWPF5, 4DNFIWZEN3FF, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, GSE120294, GSE84022, 4DNFI7H4II2V, 4DNFIREVU1Z5, 4DNFIWNNO89O, GSE99541, ENCSR981FNA, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, GSE52457, Direct, 4DNFIX7H3CE2, GSE44267, 4DNFIPAF4PYT, GSE48592, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIDKJFK2S, 4DNFIDBIEXI7

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000228600