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Basic information

CohesinDB ID: CDBG00028230

Gene Symbol: LINC02575

Ensembl ID: ENSG00000228709

Gene locus: chr21:44485576-44490288 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3939 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.652
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,Liver,Germinal-Center-B,H1-hESC,HCC1599,Motor-Neuron,NaiveB,BMEC,HUES64,SU-DHL-4,HUVEC,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFI3CFMRID, GSE95015, 4DNFIHMCILEN, 4DNFIWZEN3FF, GSE43070, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE108787, GSE84022, GSE120294, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIFHU75I5, 4DNFIYD8LO9Z, 4DNFIBXWIH8J, 4DNFIV239W4L, GSE97394, 4DNFIIMZB6Y9, GSE80820, ENCSR128RPG, GSE52457, ENCSR507AHE, 4DNFI3A3VYWU, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIXWCLD4M, 4DNFI1UEG1HD, GSE116872, 4DNFIEJEFCAM, ENCSR244BBG, 4DNFIZF1KI43, GSE44267, 4DNFI9815EEJ, 4DNFIAWVDQ8C, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR305RTT, GSE48592, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDBIEXI7, 4DNFIZGCA8AH, GSE105028, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000228709