Deatailed information for gene ENSG00000228861
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00028335
- Gene Symbol: RPL23AP12
- Ensembl ID: ENSG00000228861
-
Gene locus: chr21:39127567-39128040
Strand: +
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0516
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.952
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,Aorta,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,MCF-7,HEK293T,GM12891,SARS-Cov2-olfactory,GM12878,MSiPS,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,iPSC,Liver,ARPE-19,HCT-116,OCI-AML-3,REC-1,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,U-937,Bladder,BMEC,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Left-Ventricle,KBM-7,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:37675000-37700000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38200000-38225000~~chr21:39125000-39150000,
chr21:38350000-38375000~~chr21:39125000-39150000,
chr21:38375000-38400000~~chr21:39100000-39125000,
chr21:38375000-38400000~~chr21:39125000-39150000,
chr21:38450000-38475000~~chr21:39100000-39125000,
chr21:38450000-38475000~~chr21:39125000-39150000,
chr21:38475000-38500000~~chr21:39125000-39150000,
chr21:38475839-38477375~~chr21:39125156-39127107,
chr21:38498759-38500180~~chr21:39125156-39127107,
chr21:38500000-38525000~~chr21:39100000-39125000,
chr21:38500000-38525000~~chr21:39125000-39150000,
chr21:38504704-38506958~~chr21:39125124-39127062,
chr21:38504715-38506948~~chr21:39125188-39128467,
chr21:38504928-38507061~~chr21:39125201-39127072,
chr21:38505153-38506875~~chr21:39125458-39126872,
chr21:38525000-38550000~~chr21:39100000-39125000,
chr21:38525000-38550000~~chr21:39125000-39150000,
chr21:38650000-38675000~~chr21:39125000-39150000,
chr21:38668443-38670408~~chr21:39125161-39127119,
chr21:38668618-38670577~~chr21:39125156-39127107,
chr21:38668690-38670119~~chr21:39125458-39126872,
chr21:38675000-38700000~~chr21:39125000-39150000,
chr21:38700000-38725000~~chr21:39100000-39125000,
chr21:38700000-38725000~~chr21:39125000-39150000,
chr21:38711440-38713239~~chr21:39125215-39127084,
chr21:38725000-38750000~~chr21:39100000-39125000,
chr21:38725000-38750000~~chr21:39125000-39150000,
chr21:38732441-38735255~~chr21:39124252-39127148,
chr21:38732695-38735241~~chr21:39125188-39128467,
chr21:38732707-38735284~~chr21:39125195-39128459,
chr21:38732732-38735278~~chr21:39125141-39127110,
chr21:38732755-38735268~~chr21:39127096-39128415,
chr21:38732774-38735251~~chr21:39125169-39127059,
chr21:38732781-38735273~~chr21:39125163-39127081,
chr21:38732867-38735207~~chr21:39125201-39127072,
chr21:38732878-38735149~~chr21:39125097-39127121,
chr21:38732907-38735171~~chr21:39125144-39128433,
chr21:38732910-38735120~~chr21:39125317-39127099,
chr21:38732912-38735244~~chr21:39125068-39127102,
chr21:38732913-38735227~~chr21:39125178-39127111,
chr21:38732918-38735320~~chr21:39125161-39127119,
chr21:38732922-38735240~~chr21:39125151-39127099,
chr21:38733040-38735256~~chr21:39125142-39127123,
chr21:38733109-38735129~~chr21:39125260-39127025,
chr21:38733112-38735280~~chr21:39125212-39128459,
chr21:38733113-38735237~~chr21:39125254-39127058,
chr21:38733115-38735253~~chr21:39125310-39127084,
chr21:38733115-38735333~~chr21:39125098-39127101,
chr21:38733120-38735170~~chr21:39125209-39127143,
chr21:38733127-38735156~~chr21:39125374-39126978,
chr21:38733127-38735189~~chr21:39125161-39127067,
chr21:38733143-38735119~~chr21:39125217-39127141,
chr21:38733149-38735253~~chr21:39125305-39127127,
chr21:38733295-38735171~~chr21:39125184-39128368,
chr21:38733299-38735274~~chr21:39125124-39127062,
chr21:38733311-38735294~~chr21:39125156-39127107,
chr21:38733315-38735206~~chr21:39125126-39127076,
chr21:38733333-38735287~~chr21:39125164-39127080,
chr21:38733333-38735287~~chr21:39127128-39128385,
chr21:38733340-38735147~~chr21:39125392-39126982,
chr21:38733341-38735220~~chr21:39125246-39127033,
chr21:38733350-38735147~~chr21:39125287-39127030,
chr21:38733363-38735045~~chr21:39125243-39126927,
chr21:38733388-38735159~~chr21:39125429-39126867,
chr21:38733388-38735372~~chr21:39125407-39126885,
chr21:38733389-38735343~~chr21:39125458-39126872,
chr21:38733445-38735107~~chr21:39125220-39127056,
chr21:38750000-38775000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39100000-39125000,
chr21:38800000-38825000~~chr21:39125000-39150000,
chr21:38803978-38806088~~chr21:39125286-39127099,
chr21:38804025-38807695~~chr21:39125068-39127102,
chr21:38804026-38806194~~chr21:39125246-39127033,
chr21:38804033-38807696~~chr21:39124252-39127148,
chr21:38804047-38805972~~chr21:39125144-39128433,
chr21:38804058-38806494~~chr21:39125159-39127061,
chr21:38804079-38807181~~chr21:39125184-39128368,
chr21:38804094-38806437~~chr21:39125164-39127080,
chr21:38804103-38806461~~chr21:39125098-39127101,
chr21:38804112-38806553~~chr21:39125142-39127123,
chr21:38804148-38807306~~chr21:39125161-39127119,
chr21:38804159-38806544~~chr21:39125151-39127099,
chr21:38804159-38806607~~chr21:39125163-39127081,
chr21:38804213-38806093~~chr21:39125156-39127107,
chr21:38804345-38806440~~chr21:39125177-39127057,
chr21:38804397-38807388~~chr21:39125161-39127067,
chr21:38804458-38807167~~chr21:39125310-39127084,
chr21:38810787-38812114~~chr21:39125156-39127107,
chr21:38818748-38820756~~chr21:39125161-39127067,
chr21:38823242-38824815~~chr21:39125156-39127107,
chr21:38830399-38833946~~chr21:39124252-39127148,
chr21:38830488-38833913~~chr21:39125126-39127076,
chr21:38850000-38875000~~chr21:39100000-39125000,
chr21:38852714-38854659~~chr21:39125156-39127107,
chr21:38875000-38900000~~chr21:39100000-39125000,
chr21:38900000-38925000~~chr21:39125000-39150000,
chr21:38925000-38950000~~chr21:39100000-39125000,
chr21:38925000-38950000~~chr21:39125000-39150000,
chr21:38950000-38975000~~chr21:39100000-39125000,
chr21:38950000-38975000~~chr21:39125000-39150000,
chr21:39061365-39062529~~chr21:39125341-39127059,
chr21:39100000-39125000~~chr21:39700000-39725000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, 4DNFIBKZK63V, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIW22BNB5, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, ENCSR778FXH, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFIYDBBSE3, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, GSE68977, ENCSR752QCX, 4DNFIOUSETUP, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .