Deatailed information for gene ENSG00000228941

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  • Basic information
  • CohesinDB ID: CDBG00028379
  • Gene Symbol: UBE3AP2
  • Ensembl ID: ENSG00000228941
  • Gene locus: chr21:31060599-31063168 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1442 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.929
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,CyT49-endoderm,RT-112,H1-hESC,GM19238,HeLa-S3,H1-Trophectoderm,H9-hESC
  • Related loop: chr21:30250000-30275000~~chr21:31050000-31075000, chr21:30500000-30525000~~chr21:31050000-31075000, chr21:30825000-30850000~~chr21:31050000-31075000, chr21:30830675-30832195~~chr21:31064348-31065654, chr21:31040750-31043255~~chr21:31064080-31065830,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFIQYQWPF5, GSE52457, 4DNFIVJ3IIQL, 4DNFI6XD6JAQ, Direct, ENCSR527RXH, GSE105028, 4DNFIYDBBSE3, GSE155380, ENCSR981FNA
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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