Deatailed information for gene ENSG00000229007

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  • Basic information
  • CohesinDB ID: CDBG00028422
  • Gene Symbol: EXOSC3P1
  • Ensembl ID: ENSG00000229007
  • Gene locus: chr21:32496811-32497311 Strand: +
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3897 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.385
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,Liver,IMR-90,K-562,MCF-10A,MB157,H1-hESC,A-549,HFF-hTERT,HFFc6,HeLa-S3,BMEC
  • Related loop: chr21:31275000-31300000~~chr21:32475000-32500000, chr21:32400000-32425000~~chr21:32500000-32525000, chr21:32475000-32500000~~chr21:32575000-32600000, chr21:32500000-32525000~~chr21:32600000-32625000, chr21:32500000-32525000~~chr21:33025000-33050000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, 4DNFIBN9K4V9, GSE116869, 4DNFI7H4II2V, 4DNFIBM714BP, 4DNFICEGAHRC, GSE52457, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIAS8LV1C, GSE101921, ENCSR244BBG, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, GSE58752, ENCSR507AHE, 4DNFII84FBKM
  • Cohesin-loop subunit: Other,SMC1
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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