Deatailed information for gene ENSG00000229086
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00028472
- Gene Symbol: LINC01548
- Ensembl ID: ENSG00000229086
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Gene locus: chr21:33164808-33170649
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0654
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,Keratinocytes192627,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,REC-1,OCI-AML-3,HCT-116,Kelly,H1-hESC,HCC1599,Motor-Neuron,NaiveB,HUES64,CyT49-hESC,HUVEC,HL-60,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:32400000-32425000~~chr21:33175000-33200000,
chr21:32650000-32675000~~chr21:33175000-33200000,
chr21:32675000-32700000~~chr21:33150000-33175000,
chr21:32675000-32700000~~chr21:33175000-33200000,
chr21:32825000-32850000~~chr21:33150000-33175000,
chr21:32825000-32850000~~chr21:33175000-33200000,
chr21:32850000-32875000~~chr21:33175000-33200000,
chr21:32900000-32925000~~chr21:33175000-33200000,
chr21:32925000-32950000~~chr21:33175000-33200000,
chr21:32975000-33000000~~chr21:33150000-33175000,
chr21:32975000-33000000~~chr21:33175000-33200000,
chr21:33175000-33200000~~chr21:33350000-33375000,
chr21:33175000-33200000~~chr21:33425000-33450000,
chr21:33175000-33200000~~chr21:33600000-33625000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
GSE95015, GSE43070, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIKYXMF1E, GSE99541, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, 4DNFI6XD6JAQ, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, 4DNFI7XAZNNQ, GSE105028, 4DNFIQWD8ZYD, GSE87112, GSE94872, GSE118716, ENCSR499RVD, GSE126792, GSE155380, 4DNFIJWBWE41, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, 4DNFIH9U4I7I, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIT96Z365, 4DNFIWZEN3FF, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIALNLR78, 4DNFIYDBBSE3, 4DNFIEJEFCAM, GSE44267, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, GSE131580, 4DNFIOUSETUP, 4DNFIJ3DZPGM, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFINEQY95T, 4DNFIHN2QSMX
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .