Deatailed information for gene ENSG00000229306
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00028625
- Gene Symbol: AP001464.1
- Ensembl ID: ENSG00000229306
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Gene locus: chr21:12999675-13016692
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0886
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12878,CyT49-endoderm,HCT-116,H1-hESC,CyT49-Gut,HFFc6,HeLa-S3,H9-hESC,Olfactory,CyT49-hESC
- Related loop:
chr21:10250000-10275000~~chr21:13000000-13025000,
chr21:10325000-10350000~~chr21:13000000-13025000,
chr21:10350000-10375000~~chr21:13000000-13025000,
chr21:12975000-13000000~~chr21:13800000-13825000,
chr21:13000000-13025000~~chr21:13225000-13250000,
chr21:13000000-13025000~~chr21:13800000-13825000,
chr21:13000000-13025000~~chr21:14100000-14125000,
chr21:5225000-5250000~~chr21:12975000-13000000,
chr21:9750000-9775000~~chr21:13000000-13025000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQWD8ZYD, ENCSR637QCS, 4DNFIBCIA62Q, 4DNFIKYXMF1E, Direct, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIQ2687RT, 4DNFILIM6FDL, 4DNFIDZT7PR8, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, 4DNFIYDBBSE3, 4DNFII84FBKM, 4DNFICEGAHRC, 4DNFIIMZB6Y9
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .