Deatailed information for gene ENSG00000229623
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00028830
- Gene Symbol: METTL21AP1
- Ensembl ID: ENSG00000229623
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Gene locus: chr21:39235385-39236020
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0994
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.936
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HEK293T,K-562,TAMR-MCF7,A-549,HFF-hTERT,MCF7-FASR,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,H1-Mesendoderm
- Related loop:
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39700000-39725000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
GSE44267, 4DNFI8649RQJ, GSE52457, 4DNFI3CFMRID, 4DNFIQVMVRP6, ENCSR662QKG, Direct, GSE118716, GSE105028, 4DNFIDBIEXI7
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .