Browse_each

Basic information

CohesinDB ID: CDBG00029041

Gene Symbol: AP001043.1

Ensembl ID: ENSG00000229925

Gene locus: chr21:38888771-38903905 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0710 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Keratinocytes192627,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,K-562,A-549,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,H1-hESC,Motor-Neuron,BMEC,SU-DHL-4,RT-112,CC-2551,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, GSE118716, ENCSR499RVD, GSE108787, GSE120294, 4DNFI7H4II2V, 4DNFIMEG1QIC, 4DNFI6EIFUZI, GSE155380, 4DNFIV239W4L, 4DNFICEGAHRC, 4DNFIL9M97T2, 4DNFIE8T8JZ8, GSE52457, ENCSR507AHE, 4DNFIJ7OAIFQ, ENCSR658RQQ, 4DNFI6XD6JAQ, Direct, 4DNFIAS8LV1C, 4DNFIBY3UHJB, 4DNFIX7H3CE2, GSE101921, GSE108869, ENCSR244BBG, 4DNFIZF1KI43, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR305RTT, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, 4DNFIS5F6EBL, GSE58752, 4DNFIH7TH4MF

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000229925