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Basic information

CohesinDB ID: CDBG00029087

Gene Symbol: AP001042.2

Ensembl ID: ENSG00000229986

Gene locus: chr21:38846246-38848644 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0802 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.958
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HEK293T,K-562,H1-hESC,HFF-hTERT,MCF7-FASR,HeLa-S3,H9-hESC

Cohesin-loop type: HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIBN9K4V9, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFICEGAHRC, ENCSR587DSF, 4DNFIXWCLD4M, Direct, 4DNFISPUVQHA, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000229986