Deatailed information for gene ENSG00000230061

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  • Basic information
  • CohesinDB ID: CDBG00029136
  • Gene Symbol: TRPM2-AS
  • Ensembl ID: ENSG00000230061
  • Gene locus: chr21:44414587-44425272 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1819 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.533
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,REC-1,HCT-116,K-562,TAMR-MCF7,MB157,KBM-7,H1-hESC,MCF7-FASR,HeLa-S3,U-937,H9-hESC
  • Related loop: chr21:43350000-43375000~~chr21:44425000-44450000, chr21:43800000-43825000~~chr21:44425000-44450000, chr21:43900000-43925000~~chr21:44425000-44450000, chr21:44050000-44075000~~chr21:44425000-44450000, chr21:44075000-44100000~~chr21:44425000-44450000, chr21:44325000-44350000~~chr21:44425000-44450000, chr21:5100000-5125000~~chr21:44425000-44450000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: GSE116875, 4DNFI2J1ODWB, 4DNFII6AN691, 4DNFIE5TEYK7, Direct, 4DNFIBCIA62Q, GSE118716, GSE165038, 4DNFIV56OFE3, GSE105028, GSE120294, ENCSR545YBD, 4DNFIJWBWE41, GSE116869, 4DNFIT96Z365
  • Cohesin-loop subunit: SMC1,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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