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Basic information

CohesinDB ID: CDBG00029248

Gene Symbol: AP000688.1

Ensembl ID: ENSG00000230212

Gene locus: chr21:36069641-36126640 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3194 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.471
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,K1,H1-Mesendoderm,Olfactory,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,NCI-H1437,iPSC,REC-1,OCI-AML-3,HCT-116,Hep-G2,HT-1197,H1-hESC,HT-1376,Motor-Neuron,HUES64,CyT49-hESC,HUVEC,RT-112,CyT49-endoderm,Skin-Fibroblast,CyT49-Gut,CC-2551,HAP1,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, 4DNFITUOMFUQ, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIA6NSSBJ, 4DNFIKYXMF1E, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR299VMZ, 4DNFISPUVQHA, GSE108869, 4DNFIAWVDQ8C, ENCSR305RTT, GSE105028, ENCSR833CMG, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, ENCSR146FPM, ENCSR478BMT, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR587DSF, 4DNFIIMZB6Y9, GSE52457, Direct, ENCSR314HAC, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFIWZEN3FF, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFIPAF4PYT, ENCSR255XYX, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, ENCSR933UZH, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, ENCSR981FNA, ENCSR128RPG, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000230212