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Basic information

CohesinDB ID: CDBG00029330

Gene Symbol: LINC00159

Ensembl ID: ENSG00000230323

Gene locus: chr21:32080315-32197813 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1321 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.660
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: TAMR-MCF7,DU145,K1,H1-Mesendoderm,GM19239,MCF-7,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H9-hESC,H1-hESC,Motor-Neuron,GM19238,MSLCL,SU-DHL-4,HUVEC,Skin-Fibroblast,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIWZEN3FF, GSE43070, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, GSE108787, 4DNFI5SUHCGZ, GSE120294, ENCSR672RHL, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR732QOH, 4DNFIBM714BP, 4DNFIREVU1Z5, ENCSR668RDP, ENCSR981FNA, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFISPUVQHA, ENCSR244BBG, 4DNFIQVMVRP6, ENCSR305RTT, ENCSR338WUS, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, ENCSR527RXH, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000230323