Deatailed information for gene ENSG00000230379

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00029366
  • Gene Symbol: AP000146.1
  • Ensembl ID: ENSG00000230379
  • Gene locus: chr21:24938430-24992817 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1701 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.974
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HFF-hTERT,HeLa-S3,MSLCL
  • Related loop: chr21:23350000-23375000~~chr21:24975000-25000000, chr21:24925000-24950000~~chr21:26150000-26175000, chr21:24954838-24956486~~chr21:25297991-25299598,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFIBXWIH8J, Direct, ENCSR452NHL
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
eachgene