Deatailed information for gene ENSG00000230479
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00029436
- Gene Symbol: AP000695.1
- Ensembl ID: ENSG00000230479
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Gene locus: chr21:36430359-36481070
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1739
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.484
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-10A,TAMR-MCF7,GM12892,H1-Mesenchymal,H1-Mesendoderm,MCF-7,HEK293T,GM12878,K-562,A-549,HFFc6,PAEC,H1-Trophectoderm,H9-hESC,Liver,ARPE-19,HT-1197,H1-hESC,HT-1376,Skin-Fibroblast,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:36421453-36423350~~chr21:36477710-36479878,
chr21:36425000-36450000~~chr21:36575000-36600000,
chr21:36425000-36450000~~chr21:38300000-38325000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:36429053-36431122~~chr21:36860258-36861974,
chr21:36429235-36431507~~chr21:36456350-36458004,
chr21:36429275-36431150~~chr21:36477549-36479573,
chr21:36429321-36431439~~chr21:36456106-36458114,
chr21:36429447-36431439~~chr21:36989316-36991217,
chr21:36475000-36500000~~chr21:36575000-36600000,
chr21:36475000-36500000~~chr21:36725000-36750000,
chr21:36475000-36500000~~chr21:36900000-36925000,
chr21:36475000-36500000~~chr21:36925000-36950000,
chr21:36477778-36479875~~chr21:36490518-36492345,
chr21:36478462-36479768~~chr21:36588710-36590304,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, ENCSR662QKG, 4DNFI6CWNUFL, GSE118716, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, 4DNFIW8TIFI5, ENCSR732QOH, ENCSR668RDP, ENCSR587DSF, GSE80820, 4DNFIE8T8JZ8, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFIALNLR78, ENCSR386KHY, GSE101921, GSE44267, 4DNFIPAF4PYT, GSE48592, 4DNFI9ZWZ5BS, ENCSR110JOO, ENCSR933UZH, GSE105028, 4DNFIDBIEXI7, GSE58752, ENCSR033GUP
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .