Deatailed information for gene ENSG00000230859

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  • Basic information
  • CohesinDB ID: CDBG00029704
  • Gene Symbol: YRDCP3
  • Ensembl ID: ENSG00000230859
  • Gene locus: chr21:40863993-40864473 Strand: +
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0110 FDR = 0.1623
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,RT-112,CyT49-endoderm,TAMR-MCF7,H1-hESC,CyT49-Gut,CC-2551,HFF-hTERT,CyT49-pancreatic,Keratinocytes192627,MCF7-FASR,Motor-Neuron,H9-hESC,HUES64
  • Related loop: chr21:40450000-40475000~~chr21:40850000-40875000, chr21:40850000-40875000~~chr21:40950000-40975000, chr21:40850000-40875000~~chr21:41025000-41050000, chr21:40850000-40875000~~chr21:41050000-41075000, chr21:40850000-40875000~~chr21:41075000-41100000,
  • Cohesin-loop type: HiChIP,HiC
  • Cohesin-loop study: 4DNFI9815EEJ, 4DNFIMEG1QIC, 4DNFI2J1ODWB, 4DNFII6AN691, GSE118716, 4DNFI8JFOAJT, 4DNFIQ2687RT, 4DNFISPUVQHA, 4DNFIYDBBSE3, ENCSR794RDS, GSE105028, GSE155380, GSE120294, ENCSR228TUX, 4DNFIOX3BGNE, 4DNFIL9M97T2, GSE97394
  • Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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