Browse_each

Basic information

CohesinDB ID: CDBG00029712

Gene Symbol: FBXW11P1

Ensembl ID: ENSG00000230870

Gene locus: chr21:31627126-31628600 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2641 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.376
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-10A,HEK293T,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,SU-DHL-2,H9-hESC,HCT-116,Kelly,H1-hESC,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,RT-112,CyT49-Gut,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, 4DNFIRZA6EV6, 4DNFIR8OU6QJ, 4DNFIMROE6N4, ENCSR499RVD, 4DNFI5SUHCGZ, GSE120294, GSE126792, 4DNFIDSWKFF5, 4DNFIILDWK8M, 4DNFIOX3BGNE, ENCSR410MDC, ENCSR350NJV, ENCSR866FWQ, 4DNFIREVU1Z5, 4DNFIFHU75I5, GSE155380, 4DNFIJWBWE41, ENCSR444BAR, ENCSR981FNA, GSE97394, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFIBT4EAKN, ENCSR550JLK, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, Direct, 4DNFIALNLR78, GSE112000, GSE101921, GSE108869, 4DNFIEJEFCAM, ENCSR228TUX, GSE44267, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, ENCSR338WUS, 4DNFI7XAZNNQ, 4DNFIQ2687RT, GSE105028, 4DNFIDBIEXI7, 4DNFIDZT7PR8

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000230870