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Basic information

CohesinDB ID: CDBG00029775

Gene Symbol: AP001116.1

Ensembl ID: ENSG00000230972

Gene locus: chr21:23065490-23131206 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1512 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,iPSC,H9-endodermal,CyT49-endoderm,MSiPS,NPC-H9,Kelly,H1-hESC,Jurkat,HFF-hTERT,HAP1,HFFc6,HeLa-S3,H9-hESC,H1-Mesenchymal,HUES64

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, GSE95015, 4DNFIWZEN3FF, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, GSE120294, ENCSR361AYD, GSE103148, 4DNFIOX3BGNE, ENCSR478BMT, 4DNFIBM714BP, 4DNFII6AN691, 4DNFIYD8LO9Z, 4DNFIJWBWE41, GSE97394, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, GSE52457, 4DNFIBT4EAKN, Direct, 4DNFI6XD6JAQ, 4DNFIYDBBSE3, 4DNFI6JJQKFJ, 4DNFI8JFOAJT, ENCSR778FXH, ENCSR247RGI, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, GSE105028, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000230972