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Basic information

CohesinDB ID: CDBG00029779

Gene Symbol: LINC00160

Ensembl ID: ENSG00000230978

Gene locus: chr21:34723806-34737204 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0335 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.925
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,REC-1,HCT-116,Hep-G2,HT-1197,H1-hESC,HCC1599,Motor-Neuron,U-937,HUES64,SU-DHL-4,HUVEC,HL-60,CyT49-endoderm,KBM-7,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIRKGMZRQ, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, 4DNFIK61ILGM, GSE108869, GSE116872, ENCSR305RTT, 4DNFI7XAZNNQ, GSE105028, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIOX3BGNE, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIIMZB6Y9, GSE80820, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, ENCSR194SRI, 4DNFI5CGQ46V, GSE120294, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, ENCSR550JLK, 4DNFI3A3VYWU, GSE165038, 4DNFIYDBBSE3, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, 4DNFIJ8JKKWJ, ENCSR094EIC, GSE116869, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFI6EIFUZI, 4DNFII6AN691, GSE131580, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIC3HAU11, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000230978