Deatailed information for gene ENSG00000231058

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00029831
  • Gene Symbol: MSANTD2P1
  • Ensembl ID: ENSG00000231058
  • Gene locus: chr21:23101222-23103074 Strand: +
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0752 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,H1-hESC,HFF-hTERT,HAP1,HFFc6,HeLa-S3,H9-hESC,H1-Mesenchymal
  • Related loop: chr21:22875000-22900000~~chr21:23100000-23125000, chr21:23075000-23100000~~chr21:25300000-25325000, chr21:23100000-23125000~~chr21:23250000-23275000, chr21:23100000-23125000~~chr21:23375000-23400000, chr21:23100000-23125000~~chr21:23400000-23425000, chr21:23100000-23125000~~chr21:23475000-23500000, chr21:23100000-23125000~~chr21:23700000-23725000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI1E6NJQJ, 4DNFI8649RQJ, GSE52457, 4DNFIBT4EAKN, 4DNFIBM714BP, 4DNFIWZEN3FF, GSE43070, 4DNFIVJ3IIQL, 4DNFI6XD6JAQ, Direct, 4DNFIDJ2JZ7Q, 4DNFIFI6NIKJ, 4DNFIE8E4ANZ, GSE105028, 4DNFIB7QTIMH, GSE108787, 4DNFII84FBKM
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
eachgene