Deatailed information for gene ENSG00000231106

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  • Basic information
  • CohesinDB ID: CDBG00029866
  • Gene Symbol: LINC01436
  • Ensembl ID: ENSG00000231106
  • Gene locus: chr21:36005337-36007838 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3424 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.659
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,RT-112,Hep-G2,IMR-90,K-562,H1-hESC,A-549,CyT49-pancreatic,HFFc6,U-937,CyT49-hESC
  • Related loop: chr21:34350000-34375000~~chr21:36000000-36025000, chr21:34750000-34775000~~chr21:36000000-36025000, chr21:35850000-35875000~~chr21:36000000-36025000, chr21:36000000-36025000~~chr21:39125000-39150000, chr21:7800000-7825000~~chr21:36000000-36025000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: ENCSR393LOP, 4DNFI9YAVTI1, 4DNFI9815EEJ, 4DNFIKYXMF1E, Direct, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE165038, 4DNFIFLJLIS5, ENCSR499RVD, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR852KQC, GSE155380
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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