Browse_each

Basic information

CohesinDB ID: CDBG00029878

Gene Symbol: AF129075.1

Ensembl ID: ENSG00000231125

Gene locus: chr21:29058072-29060095 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.4852 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.345
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,GM12878,CyT49-endoderm,K-562,H1-hESC,HFF-hTERT,HAP1,HFFc6,H9-hESC,BMEC,CyT49-hESC

Cohesin-loop type: HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFIMROE6N4, 4DNFI5SUHCGZ, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, ENCSR981FNA, 4DNFIIMZB6Y9, GSE52457, 4DNFI6XD6JAQ, Direct, 4DNFIYDBBSE3, 4DNFI6JJQKFJ, 4DNFIK61ILGM, GSE44267, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, ENCSR507AHE, 4DNFII84FBKM

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000231125