Deatailed information for gene ENSG00000231201
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00029931
- Gene Symbol: AF127577.2
- Ensembl ID: ENSG00000231201
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Gene locus: chr21:14971469-14992854
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1310
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.762
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,Aorta,H1-Mesenchymal,H1-Mesendoderm,MCF-7,HEK293T,GM12878,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,Germinal-Center-B,H1-hESC,NaiveB,HUVEC,HFF-hTERT
- Related loop:
chr21:14225000-14250000~~chr21:14950000-14975000,
chr21:14275000-14300000~~chr21:14950000-14975000,
chr21:14375000-14400000~~chr21:14950000-14975000,
chr21:14475000-14500000~~chr21:14950000-14975000,
chr21:14650000-14675000~~chr21:14950000-14975000,
chr21:14775000-14800000~~chr21:14950000-14975000,
chr21:14850000-14875000~~chr21:14950000-14975000,
chr21:14850000-14875000~~chr21:14975000-15000000,
chr21:14875000-14900000~~chr21:14975000-15000000,
chr21:14950000-14975000~~chr21:15125000-15150000,
chr21:14950000-14975000~~chr21:15150000-15175000,
chr21:14950000-14975000~~chr21:15250000-15275000,
chr21:14950000-14975000~~chr21:15275000-15300000,
chr21:14950000-14975000~~chr21:15425000-15450000,
chr21:14950000-14975000~~chr21:15450000-15475000,
chr21:14950000-14975000~~chr21:15475000-15500000,
chr21:14950000-14975000~~chr21:15525000-15550000,
chr21:14950000-14975000~~chr21:15575000-15600000,
chr21:14950000-14975000~~chr21:16125000-16150000,
chr21:14975000-15000000~~chr21:15150000-15175000,
chr21:14975000-15000000~~chr21:15175000-15200000,
chr21:14975000-15000000~~chr21:15450000-15475000,
chr21:14975000-15000000~~chr21:15725000-15750000,
chr21:14975000-15000000~~chr21:16175000-16200000,
chr21:14975000-15000000~~chr21:16550000-16575000,
chr21:14975000-15000000~~chr21:21700000-21725000,
chr21:14975000-15000000~~chr21:34500000-34525000,
chr21:14991585-14992812~~chr21:15482170-15484279,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, GSE43070, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE84022, GSE120294, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFIV239W4L, ENCSR587DSF, GSE80820, 4DNFIE8T8JZ8, GSE52457, Direct, 4DNFIXWCLD4M, 4DNFISPUVQHA, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, GSE58752
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .