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Basic information

CohesinDB ID: CDBG00029950

Gene Symbol: LINC01423

Ensembl ID: ENSG00000231231

Gene locus: chr21:38323634-38333364 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2803 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.755
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,Aorta,K1,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,KU-19-19,iPSC,Liver,HT-1197,Kelly,H1-hESC,Motor-Neuron,GM19238,MSLCL,U-937,HUVEC,HL-60,NPC-H9,RT-112,KBM-7,CC-2551,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, GSE95015, 4DNFIATA1HD5, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, GSE94872, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIPV5KFMK, GSE126792, 4DNFIDSWKFF5, 4DNFIOX3BGNE, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIMEG1QIC, 4DNFIP25GZGA, 4DNFI6EIFUZI, ENCSR478BMT, 4DNFIXU2KPNQ, ENCSR866FWQ, 4DNFI9VXTBE2, 4DNFIFHU75I5, 4DNFIRKGMZRQ, 4DNFIYD8LO9Z, ENCSR668RDP, GSE131580, GSE99541, GSE155380, ENCSR981FNA, ENCSR587DSF, ENCSR452NHL, 4DNFIOUSETUP, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, 4DNFISTWNV9C, GSE52457, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIZ95S6TR, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFISPUVQHA, 4DNFIAS8LV1C, GSE165038, ENCSR386KHY, 4DNFI8Y9SRP2, GSE101921, GSE108869, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR228TUX, 4DNFI8JFOAJT, ENCSR393LOP, GSE44267, 4DNFIAWVDQ8C, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR247RGI, ENCSR338WUS, 4DNFI5LCW273, ENCSR305RTT, ENCSR527RXH, 4DNFIDKJFK2S, 4DNFIFLJLIS5, 4DNFIZGCA8AH, GSE105028, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000231231