Deatailed information for gene ENSG00000231324
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00030007
- Gene Symbol: AP000696.1
- Ensembl ID: ENSG00000231324
-
Gene locus: chr21:36632680-36637033
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = -0.1525
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.934
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-10A,TAMR-MCF7,MB157,DU145,GM12892,K1,hTERT-HME1,Olfactory,GM19239,GM12891,GM12878,K-562,HFFc6,PAEC,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,H1-hESC,HT-1376,GM19238,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,Jurkat,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:27500000-27525000~~chr21:36625000-36650000,
chr21:36125000-36150000~~chr21:36625000-36650000,
chr21:36400000-36425000~~chr21:36625000-36650000,
chr21:36419354-36421097~~chr21:36630022-36631930,
chr21:36500000-36525000~~chr21:36625000-36650000,
chr21:36503288-36505684~~chr21:36629965-36632036,
chr21:36625000-36650000~~chr21:36725000-36750000,
chr21:36625000-36650000~~chr21:36850000-36875000,
chr21:36625000-36650000~~chr21:36900000-36925000,
chr21:36625000-36650000~~chr21:36925000-36950000,
chr21:36625000-36650000~~chr21:38325000-38350000,
chr21:36629965-36632036~~chr21:36926513-36928814,
chr21:36629967-36632038~~chr21:36926717-36929094,
chr21:36629967-36632038~~chr21:37009098-37011099,
chr21:36629983-36632073~~chr21:36926687-36928814,
chr21:36629992-36632063~~chr21:36926698-36929094,
chr21:36629993-36632017~~chr21:36926436-36929179,
chr21:36629999-36631989~~chr21:36853631-36855655,
chr21:36629999-36631989~~chr21:36916779-36918440,
chr21:36629999-36631989~~chr21:36926695-36929067,
chr21:36629999-36631990~~chr21:36853672-36855599,
chr21:36629999-36631990~~chr21:36916781-36919095,
chr21:36630009-36632057~~chr21:36926465-36928856,
chr21:36630020-36631673~~chr21:36853741-36855359,
chr21:36630020-36631673~~chr21:36926943-36928561,
chr21:36630020-36631856~~chr21:36917076-36918400,
chr21:36630020-36631856~~chr21:36926866-36928715,
chr21:36630022-36631930~~chr21:36853698-36855512,
chr21:36630022-36631930~~chr21:36916749-36918779,
chr21:36630022-36631930~~chr21:36926649-36929131,
chr21:36630025-36631987~~chr21:36926664-36928827,
chr21:36630041-36631980~~chr21:36853648-36855688,
chr21:36630041-36631980~~chr21:36916655-36918813,
chr21:36630041-36631980~~chr21:36926706-36929092,
chr21:36630043-36632051~~chr21:36926683-36929117,
chr21:36630047-36631984~~chr21:36926713-36929121,
chr21:36630061-36631975~~chr21:36853777-36855522,
chr21:36630061-36631975~~chr21:36926705-36929148,
chr21:36630069-36631999~~chr21:36926719-36928757,
chr21:36630069-36632004~~chr21:36926505-36928808,
chr21:36630071-36632034~~chr21:36926986-36928735,
chr21:36630079-36631909~~chr21:36853738-36855617,
chr21:36630079-36631909~~chr21:36916843-36918429,
chr21:36630079-36631909~~chr21:36926924-36928703,
chr21:36630079-36631909~~chr21:37009057-37010910,
chr21:36630079-36631971~~chr21:36916825-36918710,
chr21:36630079-36631971~~chr21:36926751-36928873,
chr21:36630079-36632006~~chr21:36853685-36855567,
chr21:36630095-36631910~~chr21:36926753-36928677,
chr21:36630100-36631985~~chr21:36926700-36928696,
chr21:36630118-36632028~~chr21:36926726-36928770,
chr21:36630131-36631967~~chr21:36926642-36928684,
chr21:36630131-36631967~~chr21:36938670-36940602,
chr21:36630135-36631927~~chr21:36853724-36855502,
chr21:36630135-36631927~~chr21:36926709-36929084,
chr21:36630140-36632034~~chr21:36926410-36929350,
chr21:36630148-36631615~~chr21:36926948-36928575,
chr21:36630184-36631672~~chr21:36853762-36855538,
chr21:36630184-36631672~~chr21:36917051-36918370,
chr21:36630184-36631672~~chr21:36926932-36928694,
chr21:36630205-36631735~~chr21:36926885-36928641,
chr21:36630208-36631705~~chr21:36926942-36928578,
chr21:36630216-36631633~~chr21:36927027-36928493,
chr21:36630241-36631581~~chr21:36927031-36928663,
chr21:36639891-36641654~~chr21:36926687-36928814,
chr21:36640245-36641751~~chr21:36916843-36918429,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, ENCSR194SRI, 4DNFIR8OU6QJ, GSE94872, 4DNFIMROE6N4, GSE118716, 4DNFI5SUHCGZ, GSE120294, ENCSR361AYD, ENCSR672RHL, ENCSR146FPM, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIYD8LO9Z, GSE111537, ENCSR668RDP, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, GSE97394, ENCSR587DSF, ENCSR752QCX, ENCSR452NHL, 4DNFIE8T8JZ8, 4DNFIIMZB6Y9, ENCSR128RPG, 4DNFI9YAVTI1, GSE80820, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFISPUVQHA, 4DNFIX7H3CE2, ENCSR386KHY, 4DNFI8Y9SRP2, GSE101921, 4DNFII84FBKM, 4DNFIYIAUEPW, ENCSR991JXX, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR404HWQ, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI7XAZNNQ, ENCSR527RXH, ENCSR933UZH, ENCSR833CMG, 4DNFIFLJLIS5, GSE105028, GSE116869, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .