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Basic information

CohesinDB ID: CDBG00030025

Gene Symbol: AP000302.1

Ensembl ID: ENSG00000231355

Gene locus: chr21:33482498-33484258 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0815 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.716
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: iPSC,Hep-G2,H1-hESC,HFFc6,SU-DHL-2,HeLa-S3,hTERT-HME1,SU-DHL-4

Related loop: chr21:27500000-27525000~~chr21:33475000-33500000, chr21:33199071-33200963~~chr21:33478656-33481090, chr21:33478460-33481029~~chr21:33894201-33895840, chr21:33478501-33481049~~chr21:33490733-33492612, chr21:33478624-33481448~~chr21:33894294-33895564,

Cohesin-loop type: HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR128RPG, ENCSR991JXX, 4DNFIQYQWPF5, ENCSR658RQQ, 4DNFI5LCW273, 4DNFI2J1ODWB, Direct, 4DNFIMROE6N4, 4DNFIFLJLIS5, 4DNFICEGAHRC, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFIVSCH2CH

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000231355