Deatailed information for gene ENSG00000231755
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00030295
- Gene Symbol: CHODL-AS1
- Ensembl ID: ENSG00000231755
- Gene locus: chr21:17835015-17885608 Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0467
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information) - Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.959
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60 -
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90 - Whether has cohesin-loop: True
- Involved cell types for loop evidence: IMR-90,H1-hESC,A-549,HFF-hTERT,HUVEC
- Related loop: chr21:17375000-17400000~~chr21:17825000-17850000, chr21:17450000-17475000~~chr21:17825000-17850000, chr21:17675000-17700000~~chr21:17850000-17875000, chr21:17675000-17700000~~chr21:17875000-17900000, chr21:17825000-17850000~~chr21:18000000-18025000, chr21:17825000-17850000~~chr21:18225000-18250000, chr21:17850000-17875000~~chr21:18200000-18225000, chr21:17850000-17875000~~chr21:18225000-18250000, chr21:17875000-17900000~~chr21:18200000-18225000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
Tools:
- Assay
