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Basic information

CohesinDB ID: CDBG00030468

Gene Symbol: DNMT3L-AS1

Ensembl ID: ENSG00000232010

Gene locus: chr21:44250812-44251520 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0627 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.964
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,GM12878,K-562,HeLa-S3,H9-hESC,iPSC,HCT-116,H1-hESC,Motor-Neuron,U-937,CyT49-hESC,RT-112,KBM-7,CyT49-Gut,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIH2A7IKF, 4DNFI8649RQJ, 4DNFIQYQWPF5, GSE95015, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, GSE118716, 4DNFIE8E4ANZ, ENCSR545YBD, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, ENCSR410MDC, 4DNFIXU2KPNQ, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE155380, 4DNFICEGAHRC, 4DNFIE8T8JZ8, GSE52457, Direct, 4DNFIXWCLD4M, GSE165038, 4DNFIV56OFE3, 4DNFI1UEG1HD, GSE101921, 4DNFIK61ILGM, ENCSR228TUX, 4DNFIQRTP7NM, GSE44267, 4DNFIOCW5AEM, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFI7XAZNNQ, 4DNFIDKJFK2S, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIP71EWXC, 4DNFIQ2687RT, GSE105028, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIVSCH2CH

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000232010