Deatailed information for gene ENSG00000232079
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00030511
- Gene Symbol: LINC01697
- Ensembl ID: ENSG00000232079
-
Gene locus: chr21:28048403-28137611
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1956
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.765
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,MCF-7,HEK293T,GM12891,SARS-Cov2-olfactory,MSiPS,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,iPSC,ARPE-19,H1-hESC,HCC1599,Motor-Neuron,MSLCL,NaiveB,BMEC,HUES64,SU-DHL-4,HUVEC,RT-112,CyT49-endoderm,Skin-Fibroblast,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT
- Related loop:
chr21:25600000-25625000~~chr21:28050000-28075000,
chr21:25625000-25650000~~chr21:28050000-28075000,
chr21:26725000-26750000~~chr21:28025000-28050000,
chr21:26750000-26775000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28025000-28050000,
chr21:26825000-26850000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28025000-28050000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:27200000-27225000~~chr21:28050000-28075000,
chr21:27550000-27575000~~chr21:28025000-28050000,
chr21:27550000-27575000~~chr21:28050000-28075000,
chr21:27564022-27565753~~chr21:28050923-28052951,
chr21:27699913-27702170~~chr21:28051110-28052908,
chr21:27699952-27702148~~chr21:28050939-28053207,
chr21:27699963-27702208~~chr21:28050939-28052956,
chr21:27700000-27725000~~chr21:28025000-28050000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27700282-27702347~~chr21:28051033-28052927,
chr21:27700287-27702114~~chr21:28050094-28052904,
chr21:27700325-27702096~~chr21:28051197-28052726,
chr21:27700355-27702199~~chr21:28051112-28052927,
chr21:27725000-27750000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28025000-28050000,
chr21:27750000-27775000~~chr21:28050000-28075000,
chr21:27758254-27761457~~chr21:28051084-28053207,
chr21:27758344-27760729~~chr21:28050094-28052904,
chr21:27758367-27760680~~chr21:28051112-28052927,
chr21:27758380-27760590~~chr21:28051185-28052820,
chr21:27758494-27760671~~chr21:28050923-28052951,
chr21:27759289-27760526~~chr21:28051044-28052709,
chr21:27825000-27850000~~chr21:28025000-28050000,
chr21:28025000-28050000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28300000-28325000,
chr21:28050000-28075000~~chr21:28325000-28350000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28925000-28950000,
chr21:28050094-28052904~~chr21:28744171-28746673,
chr21:28050923-28052951~~chr21:28744431-28746621,
chr21:28050939-28053207~~chr21:28335622-28338264,
chr21:28050939-28053207~~chr21:28744399-28746641,
chr21:28050942-28052908~~chr21:28744204-28746655,
chr21:28050985-28053261~~chr21:28744200-28746589,
chr21:28050991-28052838~~chr21:28521403-28523335,
chr21:28050991-28052838~~chr21:28744455-28746667,
chr21:28051032-28053224~~chr21:28335606-28338251,
chr21:28051084-28053207~~chr21:28334487-28338171,
chr21:28051112-28052922~~chr21:28744497-28746545,
chr21:28051112-28052927~~chr21:28335663-28338245,
chr21:28051112-28052927~~chr21:28521324-28523315,
chr21:28051112-28052927~~chr21:28741981-28743659,
chr21:28051112-28052927~~chr21:28744452-28746493,
chr21:28051170-28052632~~chr21:28744510-28746501,
chr21:28051197-28052726~~chr21:28744207-28746569,
chr21:28051210-28052762~~chr21:28744462-28746595,
chr21:28075000-28100000~~chr21:28225000-28250000,
chr21:28075000-28100000~~chr21:28300000-28325000,
chr21:28075000-28100000~~chr21:28325000-28350000,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28075000-28100000~~chr21:28700000-28725000,
chr21:28075000-28100000~~chr21:28725000-28750000,
chr21:28075000-28100000~~chr21:28925000-28950000,
chr21:28096589-28098118~~chr21:28335562-28338194,
chr21:28096733-28098046~~chr21:28741591-28743796,
chr21:28100000-28125000~~chr21:28225000-28250000,
chr21:28100000-28125000~~chr21:28300000-28325000,
chr21:28100000-28125000~~chr21:28325000-28350000,
chr21:28100000-28125000~~chr21:28425000-28450000,
chr21:28100000-28125000~~chr21:28500000-28525000,
chr21:28100000-28125000~~chr21:28725000-28750000,
chr21:28110675-28112671~~chr21:28335622-28338264,
chr21:28125000-28150000~~chr21:28225000-28250000,
chr21:28125000-28150000~~chr21:28425000-28450000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, GSE94872, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR361AYD, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFII6AN691, 4DNFIREVU1Z5, ENCSR866FWQ, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFIJWBWE41, GSE97394, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFIIMZB6Y9, 4DNFIL9M97T2, ENCSR507AHE, 4DNFI3A3VYWU, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFIYDBBSE3, GSE116872, 4DNFIEJEFCAM, ENCSR228TUX, GSE44267, ENCSR991JXX, 4DNFI9815EEJ, 4DNFIAWVDQ8C, ENCSR778FXH, 4DNFIC3HAU11, ENCSR404HWQ, 4DNFIQVMVRP6, ENCSR305RTT, ENCSR110JOO, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .