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Basic information

CohesinDB ID: CDBG00030544

Gene Symbol: AP001057.1

Ensembl ID: ENSG00000232124

Gene locus: chr21:44200912-44207399 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0486 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.935
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,SARS-Cov2-olfactory,GM12878,CyT49-endoderm,HCT-116,IMR-90,K-562,TAMR-MCF7,H1-hESC,CyT49-Gut,HAP1,CyT49-pancreatic,HFFc6,MCF7-FASR,HeLa-S3,H9-hESC,Olfactory,CyT49-hESC

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIQYQWPF5, 4DNFI5CGQ46V, 4DNFITUOMFUQ, GSE118716, 4DNFI5SUHCGZ, 4DNFI7H4II2V, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIJWBWE41, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, Direct, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFIJ8JKKWJ, 4DNFIQ2687RT, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000232124