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Basic information

CohesinDB ID: CDBG00030593

Gene Symbol: AL157359.2

Ensembl ID: ENSG00000232193

Gene locus: chr21:18917933-18935859 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0862 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,RT-112,H1-hESC,HAP1,HeLa-S3,H9-hESC,H1-Mesendoderm

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: GSE44267, GSE52457, 4DNFIVJ3IIQL, Direct, 4DNFIDJ2JZ7Q, GSE105028, 4DNFI6JJQKFJ, GSE155380, 4DNFI7H4II2V

Cohesin-loop subunit: CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

Tools:

Assay

refGene

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AL157359.2 gene locus

AL157359.2 related cohesin sites

AL157359.2 related cohesin loop

Deatailed information for gene ENSG00000232193

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