Deatailed information for gene ENSG00000232260

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  • Basic information
  • CohesinDB ID: CDBG00030635
  • Gene Symbol: BTF3L4P1
  • Ensembl ID: ENSG00000232260
  • Gene locus: chr21:17518525-17518993 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0219 FDR = 0.0045
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.863
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,ARPE-19,GM12878,H1-hESC,A-549,HFFc6,PAEC,H9-hESC
  • Related loop: chr21:17375000-17400000~~chr21:17500000-17525000, chr21:17385997-17387993~~chr21:17511653-17514907, chr21:17386036-17388915~~chr21:17511577-17514929, chr21:17386074-17388534~~chr21:17511356-17514781, chr21:17386077-17388636~~chr21:17511764-17514939, chr21:17400000-17425000~~chr21:17500000-17525000, chr21:17500000-17525000~~chr21:27500000-27525000, chr21:17511653-17514907~~chr21:17526487-17528802,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE44267, ENCSR662QKG, ENCSR110JOO, Direct, ENCSR668RDP, GSE105028, 4DNFI5SUHCGZ, ENCSR981FNA, ENCSR587DSF
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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