Deatailed information for gene ENSG00000232623

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  • Basic information
  • CohesinDB ID: CDBG00030874
  • Gene Symbol: MRAP-AS1
  • Ensembl ID: ENSG00000232623
  • Gene locus: chr21:32306463-32308737 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2491 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.835
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,iPSC,NPC-H9,TAMR-MCF7,HFFc6,MCF7-FASR,H9-hESC
  • Related loop: chr21:29050000-29075000~~chr21:32300000-32325000, chr21:32300000-32325000~~chr21:32450000-32475000, chr21:32300000-32325000~~chr21:32575000-32600000, chr21:32300000-32325000~~chr21:32600000-32625000, chr21:32300000-32325000~~chr21:32725000-32750000, chr21:32305431-32307333~~chr21:32600164-32601910,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: ENCSR247RGI, 4DNFI5LCW273, Direct, GSE118716, GSE105028, 4DNFII84FBKM
  • Cohesin-loop subunit: CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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