Deatailed information for gene ENSG00000232687

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  • Basic information
  • CohesinDB ID: CDBG00030919
  • Gene Symbol: RPL12P9
  • Ensembl ID: ENSG00000232687
  • Gene locus: chr21:29127700-29128188 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2886 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.519
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: iPSC,REC-1,GM12878,Germinal-Center-B,RT-112,Hep-G2,K-562,A-549,CC-2551,H1-hESC,HAP1,GM12892,H9-hESC,H1-Mesenchymal
  • Related loop: chr21:29100000-29125000~~chr21:29275000-29300000, chr21:29100000-29125000~~chr21:29350000-29375000, chr21:29100000-29125000~~chr21:29675000-29700000, chr21:29100000-29125000~~chr21:29825000-29850000, chr21:29100000-29125000~~chr21:29850000-29875000, chr21:29100000-29125000~~chr21:31075000-31100000, chr21:29124718-29126312~~chr21:29176363-29177502,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE95015, GSE116875, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR545YBD, GSE84022, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFIFHU75I5, 4DNFIYD8LO9Z, GSE155380, 4DNFICSTCJQZ, GSE80820, GSE52457, 4DNFIX4PJKXZ, Direct, 4DNFI8Y9SRP2, 4DNFI1UEG1HD, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFIOCW5AEM, GSE105028, ENCSR033GUP, 4DNFIVSCH2CH
  • Cohesin-loop subunit: SMC1,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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