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Basic information

CohesinDB ID: CDBG00030922

Gene Symbol: AP001596.1

Ensembl ID: ENSG00000232692

Gene locus: chr21:26378551-26471102 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3939 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.411
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HEK293T,RT-112,IMR-90,K-562,HT-1197,H1-hESC,HFF-hTERT,HAP1,HFFc6,Keratinocytes192627,HeLa-S3,H9-hESC,H1-Mesenchymal,HUES64

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, GSE95015, 4DNFIWZEN3FF, GSE43070, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFI5SUHCGZ, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIBM714BP, 4DNFIA6NSSBJ, GSE155380, 4DNFIJWBWE41, GSE97394, 4DNFIL9M97T2, 4DNFIE8T8JZ8, GSE52457, 4DNFIM2BMJ33, Direct, 4DNFISPUVQHA, ENCSR386KHY, GSE44267, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIBKZK63V, 4DNFII84FBKM

Cohesin-loop subunit: CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000232692