Deatailed information for gene ENSG00000232837

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00031027
  • Gene Symbol: LINC01700
  • Ensembl ID: ENSG00000232837
  • Gene locus: chr21:38974428-38977774 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = -0.0342 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.584
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,IMR-90,K-562,H1-hESC,A-549,HFF-hTERT,HeLa-S3,H1-Trophectoderm,H9-hESC
  • Related loop: chr21:38525000-38550000~~chr21:38950000-38975000, chr21:38725000-38750000~~chr21:38975000-39000000, chr21:38800000-38825000~~chr21:38950000-38975000, chr21:38800000-38825000~~chr21:38975000-39000000, chr21:38950000-38975000~~chr21:39050000-39075000, chr21:38950000-38975000~~chr21:39100000-39125000, chr21:38950000-38975000~~chr21:39125000-39150000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, GSE52457, 4DNFIQVMVRP6, 4DNFIWZEN3FF, GSE43070, 4DNFIM2BMJ33, 4DNFIVJ3IIQL, Direct, 4DNFIE8E4ANZ, GSE105028, 4DNFIB7QTIMH, 4DNFIDBIEXI7, GSE108787, 4DNFIBKZK63V, 4DNFIPV5KFMK, ENCSR244BBG, 4DNFI7H4II2V
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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