Deatailed information for gene ENSG00000232855
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031040
- Gene Symbol: AF165147.1
- Ensembl ID: ENSG00000232855
-
Gene locus: chr21:28439345-28674848
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.4833
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.715
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,ARPE-19,OCI-AML-3,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,HUES64,SU-DHL-4,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:25350000-25375000~~chr21:28425000-28450000,
chr21:25350000-25375000~~chr21:28625000-28650000,
chr21:26075000-26100000~~chr21:28425000-28450000,
chr21:26525000-26550000~~chr21:28425000-28450000,
chr21:26825000-26850000~~chr21:28425000-28450000,
chr21:26825000-26850000~~chr21:28500000-28525000,
chr21:26825000-26850000~~chr21:28525000-28550000,
chr21:26825000-26850000~~chr21:28575000-28600000,
chr21:26825000-26850000~~chr21:28625000-28650000,
chr21:26850000-26875000~~chr21:28500000-28525000,
chr21:26850000-26875000~~chr21:28550000-28575000,
chr21:27100000-27125000~~chr21:28425000-28450000,
chr21:27325000-27350000~~chr21:28425000-28450000,
chr21:27550000-27575000~~chr21:28425000-28450000,
chr21:27550000-27575000~~chr21:28525000-28550000,
chr21:27600000-27625000~~chr21:28425000-28450000,
chr21:27700000-27725000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28425000-28450000,
chr21:27750000-27775000~~chr21:28500000-28525000,
chr21:27750000-27775000~~chr21:28525000-28550000,
chr21:27750000-27775000~~chr21:28575000-28600000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050991-28052838~~chr21:28521403-28523335,
chr21:28051112-28052927~~chr21:28521324-28523315,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28100000-28125000~~chr21:28425000-28450000,
chr21:28100000-28125000~~chr21:28500000-28525000,
chr21:28125000-28150000~~chr21:28425000-28450000,
chr21:28175000-28200000~~chr21:28575000-28600000,
chr21:28225000-28250000~~chr21:28425000-28450000,
chr21:28225000-28250000~~chr21:28450000-28475000,
chr21:28225000-28250000~~chr21:28525000-28550000,
chr21:28225000-28250000~~chr21:28625000-28650000,
chr21:28225000-28250000~~chr21:28650000-28675000,
chr21:28325000-28350000~~chr21:28425000-28450000,
chr21:28325000-28350000~~chr21:28500000-28525000,
chr21:28325000-28350000~~chr21:28525000-28550000,
chr21:28325000-28350000~~chr21:28575000-28600000,
chr21:28325000-28350000~~chr21:28625000-28650000,
chr21:28334487-28338171~~chr21:28521160-28523346,
chr21:28338312-28339715~~chr21:28521324-28523315,
chr21:28350000-28375000~~chr21:28475000-28500000,
chr21:28350000-28375000~~chr21:28500000-28525000,
chr21:28375000-28400000~~chr21:28625000-28650000,
chr21:28425000-28450000~~chr21:28625000-28650000,
chr21:28425000-28450000~~chr21:28700000-28725000,
chr21:28425000-28450000~~chr21:28725000-28750000,
chr21:28500000-28525000~~chr21:28625000-28650000,
chr21:28500000-28525000~~chr21:28725000-28750000,
chr21:28500000-28525000~~chr21:28925000-28950000,
chr21:28516060-28518025~~chr21:28742005-28743432,
chr21:28516094-28518223~~chr21:28744204-28746655,
chr21:28516110-28518054~~chr21:28744361-28746655,
chr21:28516260-28517994~~chr21:28744214-28746632,
chr21:28516260-28517994~~chr21:28939420-28941341,
chr21:28516268-28518070~~chr21:28744329-28746608,
chr21:28516305-28518150~~chr21:28710604-28712266,
chr21:28516305-28518150~~chr21:28744396-28746610,
chr21:28516312-28518065~~chr21:28744462-28746595,
chr21:28516335-28518256~~chr21:28710721-28711970,
chr21:28516335-28518256~~chr21:28744250-28746679,
chr21:28516335-28518256~~chr21:28939349-28941136,
chr21:28516349-28517977~~chr21:28744171-28746673,
chr21:28516366-28517998~~chr21:28744241-28746558,
chr21:28516366-28518040~~chr21:28744325-28746663,
chr21:28516367-28517967~~chr21:28744528-28746609,
chr21:28516369-28518093~~chr21:28744334-28746652,
chr21:28516385-28518004~~chr21:28744246-28746649,
chr21:28516389-28518036~~chr21:28710702-28711996,
chr21:28516389-28518036~~chr21:28742004-28743407,
chr21:28516389-28518036~~chr21:28744431-28746621,
chr21:28516405-28518026~~chr21:28744207-28746569,
chr21:28516412-28518000~~chr21:28741981-28743659,
chr21:28516422-28518049~~chr21:28744175-28746644,
chr21:28516435-28517898~~chr21:28744281-28746569,
chr21:28516442-28517932~~chr21:28744495-28746431,
chr21:28516448-28517941~~chr21:28744483-28746572,
chr21:28516451-28517995~~chr21:28744497-28746545,
chr21:28516480-28517852~~chr21:28744326-28746557,
chr21:28516482-28517966~~chr21:28744423-28746593,
chr21:28516496-28517982~~chr21:28744207-28746688,
chr21:28516499-28517905~~chr21:28744483-28746431,
chr21:28516500-28517883~~chr21:28744479-28746534,
chr21:28516504-28517958~~chr21:28744313-28746546,
chr21:28516509-28517821~~chr21:28744324-28746498,
chr21:28516517-28517884~~chr21:28744494-28746441,
chr21:28516537-28517911~~chr21:28744386-28746621,
chr21:28516541-28517884~~chr21:28744431-28746530,
chr21:28518143-28519542~~chr21:28744431-28746621,
chr21:28521313-28523242~~chr21:28643788-28645721,
chr21:28525000-28550000~~chr21:28625000-28650000,
chr21:28525000-28550000~~chr21:28700000-28725000,
chr21:28525000-28550000~~chr21:28725000-28750000,
chr21:28525000-28550000~~chr21:28925000-28950000,
chr21:28525000-28550000~~chr21:30125000-30150000,
chr21:28550000-28575000~~chr21:28675000-28700000,
chr21:28550000-28575000~~chr21:28725000-28750000,
chr21:28575000-28600000~~chr21:28725000-28750000,
chr21:28575000-28600000~~chr21:28925000-28950000,
chr21:28625000-28650000~~chr21:28725000-28750000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE43070, 4DNFIDJ2JZ7Q, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIXWCLD4M, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFIVJ3IIQL, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR933UZH, GSE116869, 4DNFI8649RQJ, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, ENCSR981FNA, ENCSR752QCX, ENCSR128RPG, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .