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Basic information

CohesinDB ID: CDBG00031061

Gene Symbol: AF127936.1

Ensembl ID: ENSG00000232884

Gene locus: chr21:14676697-14763015 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1340 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.485
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: Keratinocytes192627,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,GM12878,K-562,A-549,HeLa-S3,H9-hESC,KU-19-19,iPSC,Hep-G2,HT-1197,H1-hESC,Motor-Neuron,GM19238,MSLCL,NaiveB,HUES64,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,CyT49-Gut,CC-2551,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIH2A7IKF, 4DNFI8649RQJ, 4DNFIQYQWPF5, ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, ENCSR499RVD, GSE120294, GSE84022, 4DNFI7H4II2V, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIP25GZGA, ENCSR732QOH, 4DNFIREVU1Z5, 4DNFIWNNO89O, GSE99541, GSE155380, ENCSR981FNA, GSE97394, 4DNFICEGAHRC, ENCSR587DSF, ENCSR452NHL, 4DNFIE8T8JZ8, 4DNFIIMZB6Y9, 4DNFIJBJ6QVH, 4DNFI9YAVTI1, 4DNFIL9M97T2, GSE52457, GSE80820, Direct, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIX7H3CE2, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFIYDBBSE3, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR305RTT, ENCSR404HWQ, GSE48592, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, ENCSR527RXH, 4DNFIDKJFK2S, 4DNFIQ2687RT, 4DNFIDBIEXI7, GSE105028

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000232884