Deatailed information for gene ENSG00000232886

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  • Basic information
  • CohesinDB ID: CDBG00031063
  • Gene Symbol: AF212831.1
  • Ensembl ID: ENSG00000232886
  • Gene locus: chr21:16862874-16873691 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0622 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.958
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: H9-hESC,Olfactory,HeLa-S3,Motor-Neuron
  • Related loop: chr21:16175000-16200000~~chr21:16875000-16900000, chr21:16450000-16475000~~chr21:16850000-16875000, chr21:16575000-16600000~~chr21:16850000-16875000, chr21:16850000-16875000~~chr21:17250000-17275000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFIQVMVRP6, ENCSR866FWQ, Direct, 4DNFIRKGMZRQ, GSE105028
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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