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Basic information

CohesinDB ID: CDBG00031283

Gene Symbol: RPS3AP1

Ensembl ID: ENSG00000233206

Gene locus: chr21:20430442-20430762 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0082 FDR = 0.2990
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: iPSC,H9-endodermal,H1-hESC,HAP1,CyT49-pancreatic,H9-hESC,HUES64

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIE8T8JZ8, 4DNFI9815EEJ, 4DNFI3A3VYWU, ENCSR478BMT, GSE95015, 4DNFII6AN691, Direct, 4DNFIYD8LO9Z, GSE105028, 4DNFIDZT7PR8, GSE120294, 4DNFIEJEFCAM, GSE97394, 4DNFIIMZB6Y9, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000233206