Deatailed information for gene ENSG00000233213
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031286
- Gene Symbol: KCNJ6-AS1
- Ensembl ID: ENSG00000233213
-
Gene locus: chr21:37717101-37719569
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1258
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.957
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,Primed-hESC,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,KBM-7,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:37165903-37167741~~chr21:37711396-37713035,
chr21:37700000-37725000~~chr21:37825000-37850000,
chr21:37700000-37725000~~chr21:37875000-37900000,
chr21:37700000-37725000~~chr21:37900000-37925000,
chr21:37700000-37725000~~chr21:37925000-37950000,
chr21:37700000-37725000~~chr21:37950000-37975000,
chr21:37700000-37725000~~chr21:38050000-38075000,
chr21:37700000-37725000~~chr21:38100000-38125000,
chr21:37700000-37725000~~chr21:38125000-38150000,
chr21:37700000-37725000~~chr21:38150000-38175000,
chr21:37700000-37725000~~chr21:38325000-38350000,
chr21:37700000-37725000~~chr21:38350000-38375000,
chr21:37700000-37725000~~chr21:39125000-39150000,
chr21:37700000-37725000~~chr21:39150000-39175000,
chr21:37710058-37714050~~chr21:37769665-37771313,
chr21:37710058-37714050~~chr21:37915593-37917649,
chr21:37710058-37714050~~chr21:37917683-37919463,
chr21:37710058-37714050~~chr21:38139516-38141430,
chr21:37710487-37712977~~chr21:37915309-37917693,
chr21:37710487-37712977~~chr21:38125804-38127970,
chr21:37710487-37712977~~chr21:38355104-38357300,
chr21:37710499-37712987~~chr21:38125763-38127934,
chr21:37710638-37713716~~chr21:37914870-37917976,
chr21:37710638-37713716~~chr21:38125790-38127981,
chr21:37710736-37713758~~chr21:37914851-37917797,
chr21:37710736-37713758~~chr21:38125761-38128067,
chr21:37710736-37713758~~chr21:38169391-38172834,
chr21:37710736-37713758~~chr21:38355287-38357113,
chr21:37711372-37713046~~chr21:37915606-37917528,
chr21:37711372-37713046~~chr21:38125725-38127860,
chr21:37711375-37712997~~chr21:38217749-38220501,
chr21:37711375-37712997~~chr21:38355275-38357287,
chr21:37711392-37713025~~chr21:38125767-38127866,
chr21:37711392-37713166~~chr21:37915411-37917551,
chr21:37711392-37713166~~chr21:38125754-38127987,
chr21:37711394-37712982~~chr21:37915529-37918394,
chr21:37711394-37712982~~chr21:38125749-38127915,
chr21:37711394-37712982~~chr21:38351543-38353716,
chr21:37711394-37712982~~chr21:38355432-38357106,
chr21:37711395-37713012~~chr21:37914884-37917576,
chr21:37711395-37713012~~chr21:38125801-38127928,
chr21:37711395-37713012~~chr21:38355322-38357346,
chr21:37711396-37712996~~chr21:38125971-38127690,
chr21:37711396-37712996~~chr21:38355129-38357200,
chr21:37711396-37713035~~chr21:37915225-37917656,
chr21:37711397-37713457~~chr21:37915637-37917611,
chr21:37711397-37713457~~chr21:38125740-38127873,
chr21:37711397-37713457~~chr21:38355442-38357264,
chr21:37711406-37712950~~chr21:38125771-38127931,
chr21:37711406-37712996~~chr21:38351825-38353553,
chr21:37711406-37712996~~chr21:38355277-38357273,
chr21:37711408-37712950~~chr21:38125778-38127949,
chr21:37711418-37712993~~chr21:37915255-37918377,
chr21:37711418-37712993~~chr21:38125791-38127926,
chr21:37711434-37712961~~chr21:38126151-38127594,
chr21:37711434-37712993~~chr21:38125779-38127911,
chr21:37711438-37713000~~chr21:38125779-38127948,
chr21:37711438-37713000~~chr21:38351755-38353771,
chr21:37711438-37713000~~chr21:38355274-38357174,
chr21:37711441-37713006~~chr21:38125941-38127948,
chr21:37711441-37713006~~chr21:38355373-38357156,
chr21:37711442-37712977~~chr21:38126150-38127604,
chr21:37711445-37712965~~chr21:37915589-37917624,
chr21:37711445-37712965~~chr21:38125778-38127688,
chr21:37711446-37713025~~chr21:38125798-38127942,
chr21:37711455-37712980~~chr21:38125790-38127976,
chr21:37711455-37712980~~chr21:38351797-38353501,
chr21:37711455-37712980~~chr21:38355282-38357170,
chr21:37711458-37712951~~chr21:38355303-38357092,
chr21:37711462-37712982~~chr21:37915731-37917102,
chr21:37711462-37712982~~chr21:38126125-38127630,
chr21:37711462-37712982~~chr21:38355333-38356894,
chr21:37711467-37712985~~chr21:38125934-38127923,
chr21:37711467-37712985~~chr21:38355325-38357124,
chr21:37711477-37713059~~chr21:38351760-38353699,
chr21:37711511-37712978~~chr21:38351792-38353520,
chr21:37711568-37712969~~chr21:37915343-37917688,
chr21:37711568-37712969~~chr21:38355272-38357307,
chr21:37711574-37712971~~chr21:38126041-38127628,
chr21:37711651-37712969~~chr21:38126216-38127622,
chr21:37711651-37712969~~chr21:38355362-38356894,
chr21:37711676-37712970~~chr21:38355460-38356861,
chr21:37716838-37718336~~chr21:37915589-37917624,
chr21:37717141-37718351~~chr21:38125790-38127976,
chr21:37717141-37718351~~chr21:38351797-38353501,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, 4DNFIDSWKFF5, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, ENCSR668RDP, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIOX3BGNE, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFIPAF4PYT, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFIP25GZGA, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFI1UEG1HD, GSE101921, 4DNFIOCW5AEM, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .