Deatailed information for gene ENSG00000233393
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031408
- Gene Symbol: AP000688.2
- Ensembl ID: ENSG00000233393
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Gene locus: chr21:36104880-36109690
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0413
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.655
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H9-endodermal,DU145,K1,H1-Mesendoderm,MCF-7,GM12891,GM12878,K-562,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,NCI-H1437,Hep-G2,HT-1197,H1-hESC,HT-1376,CyT49-endoderm,HFF-hTERT,HAP1
- Related loop:
chr21:34325000-34350000~~chr21:36075000-36100000,
chr21:34350000-34375000~~chr21:36075000-36100000,
chr21:34350000-34375000~~chr21:36100000-36125000,
chr21:34675000-34700000~~chr21:36100000-36125000,
chr21:34875000-34900000~~chr21:36100000-36125000,
chr21:35839536-35841080~~chr21:36112039-36113944,
chr21:35850000-35875000~~chr21:36100000-36125000,
chr21:35925000-35950000~~chr21:36100000-36125000,
chr21:35931786-35934458~~chr21:36111989-36114651,
chr21:35950000-35975000~~chr21:36075000-36100000,
chr21:35950000-35975000~~chr21:36100000-36125000,
chr21:36027315-36029474~~chr21:36112024-36114058,
chr21:36027381-36029536~~chr21:36112029-36113907,
chr21:36027554-36029658~~chr21:36112019-36114026,
chr21:36038258-36039755~~chr21:36103947-36105791,
chr21:36045268-36046896~~chr21:36112056-36113996,
chr21:36052399-36053789~~chr21:36111955-36113883,
chr21:36058447-36061428~~chr21:36111897-36113834,
chr21:36059236-36061877~~chr21:36111989-36114651,
chr21:36059285-36061312~~chr21:36104007-36105819,
chr21:36059285-36061312~~chr21:36112056-36113996,
chr21:36059311-36061185~~chr21:36103004-36105170,
chr21:36059311-36061185~~chr21:36112033-36114031,
chr21:36059312-36061200~~chr21:36104038-36105851,
chr21:36059347-36061711~~chr21:36102970-36104752,
chr21:36059348-36061289~~chr21:36103921-36105755,
chr21:36059348-36061289~~chr21:36112009-36113920,
chr21:36059365-36061258~~chr21:36112039-36113944,
chr21:36059394-36061226~~chr21:36112056-36114424,
chr21:36059613-36061297~~chr21:36103944-36105869,
chr21:36069440-36070708~~chr21:36112102-36113990,
chr21:36075000-36100000~~chr21:36175000-36200000,
chr21:36075000-36100000~~chr21:38250000-38275000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, GSE95015, 4DNFIMROE6N4, 4DNFITUOMFUQ, 4DNFIE8E4ANZ, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR146FPM, ENCSR672RHL, ENCSR410MDC, 4DNFIEYQ5ZIR, ENCSR478BMT, 4DNFIBM714BP, 4DNFII6AN691, ENCSR668RDP, 4DNFIBXWIH8J, ENCSR981FNA, ENCSR587DSF, 4DNFICEGAHRC, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFIPAF4PYT, ENCSR255XYX, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, ENCSR933UZH, ENCSR833CMG, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIFLJLIS5, 4DNFINEQY95T, GSE105028, 4DNFII84FBKM
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .