Deatailed information for gene ENSG00000233480
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031473
- Gene Symbol: LINC01683
- Ensembl ID: ENSG00000233480
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Gene locus: chr21:19893112-19900043
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1634
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H1-hESC,HFF-hTERT,HeLa-S3,H9-hESC,H1-Mesenchymal
- Related loop:
chr21:18500000-18525000~~chr21:19875000-19900000,
chr21:18500000-18525000~~chr21:19900000-19925000,
chr21:18525000-18550000~~chr21:19875000-19900000,
chr21:18825000-18850000~~chr21:19875000-19900000,
chr21:19375000-19400000~~chr21:19875000-19900000,
chr21:19600000-19625000~~chr21:19875000-19900000,
chr21:19600000-19625000~~chr21:19900000-19925000,
chr21:19675000-19700000~~chr21:19875000-19900000,
chr21:19750000-19775000~~chr21:19875000-19900000,
chr21:19775000-19800000~~chr21:19875000-19900000,
chr21:19800000-19825000~~chr21:19900000-19925000,
chr21:19875000-19900000~~chr21:20000000-20025000,
chr21:19875000-19900000~~chr21:20750000-20775000,
chr21:19900000-19925000~~chr21:20000000-20025000,
chr21:19900000-19925000~~chr21:20025000-20050000,
chr21:19900000-19925000~~chr21:20425000-20450000,
chr21:19900000-19925000~~chr21:20550000-20575000,
chr21:19900000-19925000~~chr21:20875000-20900000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, GSE52457, 4DNFIQVMVRP6, 4DNFIBM714BP, 4DNFIWZEN3FF, Direct, 4DNFISPUVQHA, GSE105028, 4DNFIB7QTIMH
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .