Deatailed information for gene ENSG00000233640
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031585
- Gene Symbol: KRTAP13-5P
- Ensembl ID: ENSG00000233640
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Gene locus: chr21:30436465-30436964
Strand: -
- Gene type: unprocessed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0726
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12891,H9-endodermal,Skin-Fibroblast,K-562,H1-hESC,CC-2551,MSLCL,SU-DHL-2,KU-19-19,hTERT-HME1,H9-hESC,HUES64
- Related loop:
chr21:29375000-29400000~~chr21:30425000-30450000,
chr21:30043654-30045703~~chr21:30433235-30435097,
chr21:30043774-30045603~~chr21:30433524-30435077,
chr21:30325000-30350000~~chr21:30425000-30450000,
chr21:30340030-30342152~~chr21:30433551-30435071,
chr21:30340048-30341945~~chr21:30433610-30434852,
chr21:30340360-30341986~~chr21:30433572-30435022,
chr21:30344537-30345918~~chr21:30433207-30435071,
chr21:30425000-30450000~~chr21:31075000-31100000,
chr21:30425000-30450000~~chr21:31600000-31625000,
chr21:30433599-30434839~~chr21:31085880-31087834,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR991JXX, 4DNFIMEG1QIC, ENCSR478BMT, ENCSR404HWQ, ENCSR732QOH, 4DNFIREVU1Z5, ENCSR299VMZ, Direct, GSE105028, GSE120294, ENCSR545YBD, GSE97394, ENCSR452NHL
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .