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Basic information

CohesinDB ID: CDBG00031666

Gene Symbol: AP001628.2

Ensembl ID: ENSG00000233754

Gene locus: chr21:42781073-42782229 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2498 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.702
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,GM12878,K-562,TAMR-MCF7,H1-hESC,A-549,HFF-hTERT,MCF7-FASR

Related loop: chr21:41700000-41725000~~chr21:42775000-42800000, chr21:42025000-42050000~~chr21:42775000-42800000, chr21:42125000-42150000~~chr21:42775000-42800000, chr21:42275000-42300000~~chr21:42775000-42800000, chr21:42300000-42325000~~chr21:42775000-42800000, chr21:42575000-42600000~~chr21:42775000-42800000, chr21:42675000-42700000~~chr21:42775000-42800000, chr21:42775000-42800000~~chr21:43175000-43200000, chr21:42775000-42800000~~chr21:43200000-43225000,

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIE8T8JZ8, ENCSR393LOP, Direct, GSE118716, 4DNFISPUVQHA, ENCSR545YBD, ENCSR410MDC

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000233754