Deatailed information for gene ENSG00000233756
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031668
- Gene Symbol: DSCAM-IT1
- Ensembl ID: ENSG00000233756
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Gene locus: chr21:40618506-40630767
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0154
FDR = 0.0473
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.965
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,K-562,TAMR-MCF7,HFF-hTERT,MCF7-FASR,H1-Mesendoderm
- Related loop:
chr21:39750000-39775000~~chr21:40625000-40650000,
chr21:40125000-40150000~~chr21:40625000-40650000,
chr21:40175000-40200000~~chr21:40625000-40650000,
chr21:40325000-40350000~~chr21:40600000-40625000,
chr21:40450000-40475000~~chr21:40625000-40650000,
chr21:40475000-40500000~~chr21:40600000-40625000,
chr21:40600000-40625000~~chr21:40800000-40825000,
chr21:40600000-40625000~~chr21:40875000-40900000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40625000-40650000~~chr21:41075000-41100000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, GSE52457, 4DNFIBM714BP, Direct, GSE118716, GSE108787, 4DNFIDBIEXI7, 4DNFIW8TIFI5
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .